Publications by the researcher in collaboration with Miguel Xavier Fernandes (12)

2009

  1. Simuflex: Algorithms and tools for simulation of the conformation and dynamics of flexible molecules and nanoparticles in dilute solution

    Journal of Chemical Theory and Computation, Vol. 5, Núm. 10, pp. 2606-2618

2004

  1. Interpretation of NMR relaxation properties of Pin1, a two-domain protein, based on Brownian dynamic simulations

    Journal of Biomolecular NMR, Vol. 29, Núm. 1, pp. 21-35

2003

  1. Calculation of electro-optical properties of rigid particles and flexible macromolecules in solution.

    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY

  2. Calculation of the solution properties of flexible macromolecules: Methods and applications

    European Biophysics Journal

2002

  1. Brownian dynamics simulation of rigid particles of arbitrary shape in external fields

    Biophysical Journal, Vol. 83, Núm. 6, pp. 3039-3048

  2. Brownian dynamics simulation of the unsaturated lipidic molecules oleic and docosahexaenoic acid confined in a cellular membrane

    Biochimica et Biophysica Acta - Biomembranes, Vol. 1565, Núm. 1, pp. 29-35

  3. Calculation of hydrodynamic properties of small nucleic acids from their atomic structure

    Nucleic Acids Research, Vol. 30, Núm. 8, pp. 1782-1788

  4. Joint determination by Brownian dynamics and fluorescence quenching of the in-depth location profile of biomolecules in membranes

    Analytical Biochemistry, Vol. 307, Núm. 1, pp. 1-12

2001

  1. An analytical solution to the problem of the orientation of rigid particles by planar obstacles. Application to membrane systems and to the calculation of dipolar couplings in protein NMR spectroscopy

    Journal of the American Chemical Society, Vol. 123, Núm. 48, pp. 12037-12047

2000

  1. A Brownian dynamics simulation of an acyl chain and a trans-parmaric acid molecule confined in a phospholipid bilayer in the gel and liquid-crystal phases

    Journal of Physical Chemistry B, Vol. 104, Núm. 48, pp. 11579-11584

  2. Conformation and dynamic properties of a saturated hydrocarbon chain confined in a model membrane: A Brownian dynamics simulation

    Biochimica et Biophysica Acta - Biomembranes, Vol. 1463, Núm. 1, pp. 131-141

1999

  1. Simulation of the distribution and diffusion of a rigid amphipathic particle embedded in a model membrane

    Biophysical Chemistry, Vol. 79, Núm. 1, pp. 41-53