Publications (211) Jesualdo Tomas Fernandez Breis publications View referenced research data.

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2025

  1. Advanced analysis of retrotransposon variation in the human genome with nanopore sequencing using RetroInspector

    Scientific Reports, Vol. 15, Núm. 1

  2. Annotation of biological samples data to standard ontologies with support from large language models

    Computational and Structural Biotechnology Journal, Vol. 27, pp. 2155-2167

  3. Evaluation of alignment methods to support the assessment of similarity between e-commerce knowledge graphs

    Knowledge-Based Systems, Vol. 315

  4. Inferring Semantic Schemas on Tabular Data Using Functional Probabilities

    International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, IC3K - Proceedings

  5. Integrating Retrieval-Augmented Generation with the BioPortal Annotator for Biological Sample Annotation

    International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, IC3K - Proceedings

  6. OntoGenix: Leveraging Large Language Models for enhanced ontology engineering from datasets

    Information Processing and Management, Vol. 62, Núm. 3

  7. Ontology Coverage Analysis through Language Models

    Engineering Applications of Artificial Intelligence, Vol. 162

  8. Optimizing clustering-based analytical methods with trimmed and sparse clustering

    Computers in Biology and Medicine, Vol. 194

  9. Representation of chemistry transport models simulations using knowledge graphs

    Journal of Cheminformatics, Vol. 17, Núm. 1

2024

  1. Analysis of the Impact of Orthogonality in the Readability of the OBO Foundry Ontologies

    Lecture Notes in Networks and Systems

  2. Design and Evaluation of a Dryer System for IoT Hyperlocal Particulate Matter Monitoring Device

    IEEE Sensors Journal, Vol. 24, Núm. 7, pp. 11152-11165

  3. Embedded machine learning of IoT streams to promote early detection of unsafe environments

    Internet of Things (Netherlands), Vol. 25

  4. Improving Air Quality Zoning Through Deep Learning and Hyperlocal Measurements

    IEEE Access, Vol. 12, pp. 38700-38716

  5. Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation

    Nucleic Acids Research, Vol. 52, Núm. 15, pp. e69

  6. ONTO-TDM domain ontology population for a specific discipline

    Applied Ontology, Vol. 19, Núm. 3, pp. 265-285

  7. Ontology Network for the Standardization of the EU CBAM report data

    CEUR Workshop Proceedings

  8. The Cybersecurity Ontology Network: the first building block for a comprehensive Cybersecurity Knowledge Graph

    CEUR Workshop Proceedings

2023

  1. Correction: Cytokine production by newborns: influence of sex and season of birth (Pediatric Research, (2023), 93, 3, (526-534), 10.1038/s41390-022-02153-1)

    Pediatric Research

  2. Cytokine production by newborns: influence of sex and season of birth

    Pediatric Research, Vol. 93, Núm. 3, pp. 526-534

  3. Detection and annotation of transposable element insertions and deletions on the human genome using nanopore sequencing

    iScience, Vol. 26, Núm. 11