Publications (19) Jesualdo Tomas Fernandez Breis publications View referenced research data.

filter_list Databases

2025

  1. OntoGenix: Leveraging Large Language Models for enhanced ontology engineering from datasets

    Information Processing and Management, Vol. 62, Núm. 3

2024

  1. Integration of chromosome locations and functional aspects of enhancers and topologically associating domains in knowledge graphs enables versatile queries about gene regulation

    Nucleic Acids Research, Vol. 52, Núm. 15, pp. e69

2022

  1. Performance assessment of ontology matching systems for FAIR data

    Journal of Biomedical Semantics, Vol. 13, Núm. 1

  2. The gene regulation knowledge commons: the action area of GREEKC

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1865, Núm. 1

2021

  1. Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models

    Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, Vol. 1864, Núm. 11-12

  2. Semankey: A Semantics-Driven Approach for Querying RDF Repositories Using Keywords

    IEEE Access, Vol. 9, pp. 91282-91302

2020

  1. Semantic publication of agricultural scientific literature using property graphs

    Applied Sciences (Switzerland), Vol. 10, Núm. 3

2019

  1. BioHackathon series in 2013 and 2014: Improvements of semantic interoperability in life science data and services

    F1000Research, Vol. 8

2018

  1. Application of high performance computing techniques to the semantic data transformation

    Advances in Intelligent Systems and Computing

2017

  1. Combining Archetypes, Ontologies and Formalization Enables Automated Computation of Quality Indicators

    Studies in Health Technology and Informatics, Vol. 235, pp. 416-420

  2. Leveraging logical rules for efficacious representation of large orthology datasets

    CEUR Workshop Proceedings

  3. Optimizing Semantic Data Transformation using High Performance Computing Techniques

    CEUR Workshop Proceedings

  4. Publishing biomedical predication MEDLINE repository about MeSH co-occurrences in

    Studies in Health Technology and Informatics

2016

  1. Generation of open biomedical datasets through ontology-driven transformation and integration processes

    Journal of Biomedical Semantics, Vol. 7, Núm. 1

2015

  1. Lessons learned in the generation of biomedical research datasets using Semantic Open Data technologies

    Studies in Health Technology and Informatics

  2. Towards the semantic standardization of orthology content

    CEUR Workshop Proceedings

2013

  1. OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows

    Journal of Biomedical Semantics, Vol. 4, Núm. 1

2012

  1. Exploitation of ontologies for the management of clinical archetypes in ArchMS

    CEUR Workshop Proceedings

2006

  1. Archetype-based semantic integration and standardization of clinical data

    2006 28TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-15